CGAL/Mesh_3/initialize_triangulation_from_labeled_image.h

// Copyright (c) 2015,2016 GeometryFactory
// All rights reserved.
//
// This file is part of CGAL (www.cgal.org).
// You can redistribute it and/or modify it under the terms of the GNU
// General Public License as published by the Free Software Foundation,
// either version 3 of the License, or (at your option) any later version.
//
// Licensees holding a valid commercial license may use this file in
// accordance with the commercial license agreement provided with the software.
//
// This file is provided AS IS with NO WARRANTY OF ANY KIND, INCLUDING THE
// WARRANTY OF DESIGN, MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.
//
// $URL$
// $Id$
//
//
// Author(s)     : Laurent Rineau

#ifndef CGAL_MESH_3_INITIALIZE_TRIANGULATION_FROM_LABELED_IMAGE_H
#define CGAL_MESH_3_INITIALIZE_TRIANGULATION_FROM_LABELED_IMAGE_H

#include <CGAL/license/Mesh_3.h>


#include <CGAL/Mesh_3/search_for_connected_components_in_labeled_image.h>

#include <iostream>
#include <queue>
#include <CGAL/Mesh_3/squared_distance_Point_3_Triangle_3.h>
#include <CGAL/iterator.h>
#include <CGAL/point_generators_3.h>
#include <CGAL/Image_3.h>
#include <CGAL/make_mesh_3.h>
#include <boost/foreach.hpp>

template <typename Point>
struct Get_point
{
  const double vx, vy, vz;
  Get_point(const CGAL::Image_3* image)
    : vx(image->vx())
    , vy(image->vy())
    , vz(image->vz())
  {}

  Point operator()(const std::size_t i,
                   const std::size_t j,
                   const std::size_t k) const
  {
    return Point(double(i) * vx, double(j) * vy, double(k) * vz);
  }
};
template<class C3T3, class MeshDomain, class MeshCriteria>
void init_tr_from_labeled_image_call_init_features(C3T3&,
                                                   const MeshDomain&,
                                                   const MeshCriteria&,
                                                   CGAL::Tag_false)
{
}
template<class C3T3, class MeshDomain, class MeshCriteria>
void init_tr_from_labeled_image_call_init_features(C3T3& c3t3,
                                                   const MeshDomain& domain,
                                                   const MeshCriteria& criteria,
                                                   CGAL::Tag_true)
{
  CGAL::internal::Mesh_3::init_c3t3_with_features(c3t3,
                                                  domain,
                                                  criteria);
  std::cout << c3t3.triangulation().number_of_vertices()
            << " initial points on 1D-features" << std::endl;
}


template<class C3T3, class MeshDomain, class MeshCriteria,
         typename Image_word_type>
void initialize_triangulation_from_labeled_image(C3T3& c3t3,
                                                 const MeshDomain&   domain,
                                                 const CGAL::Image_3& image,
                                                 const MeshCriteria& criteria,
                                                 Image_word_type,
                                                 bool protect_features = false
                                                 )
{
  typedef typename C3T3::Triangulation       Tr;
  typedef typename Tr::Weighted_point        Weighted_point;
  typedef typename Tr::Bare_point            Bare_point;
  typedef typename Tr::Segment               Segment_3;
  typedef typename Tr::Geom_traits::Vector_3 Vector_3;
  typedef typename Tr::Vertex_handle         Vertex_handle;
  typedef typename Tr::Cell_handle           Cell_handle;

  typedef MeshDomain                         Mesh_domain;

  Tr& tr = c3t3.triangulation();

  typename Tr::Geom_traits::Construct_point_3 wp2p =
    tr.geom_traits().construct_point_3_object();
  typename Tr::Geom_traits::Construct_weighted_point_3 p2wp =
    tr.geom_traits().construct_weighted_point_3_object();

  if(protect_features) {
    init_tr_from_labeled_image_call_init_features
      (c3t3, domain, criteria,
       CGAL::internal::Mesh_3::Has_features<Mesh_domain>());
  }

  const double max_v = (std::max)((std::max)(image.vx(),
                                             image.vy()),
                                  image.vz());

  typedef std::vector<std::pair<Bare_point, std::size_t> > Seeds;
  Seeds seeds;
  Get_point<Bare_point> get_point(&image);
  std::cout << "Searching for connected components..." << std::endl;
  CGAL::Identity<Image_word_type> no_transformation;
  search_for_connected_components_in_labeled_image(image,
                                                   std::back_inserter(seeds),
                                                   CGAL::Emptyset_iterator(),
                                                   no_transformation,
                                                   get_point,
                                                   Image_word_type());
  std::cout << "  " << seeds.size() << " components were found." << std::endl;
  std::cout << "Construct initial points..." << std::endl;
  for(typename Seeds::const_iterator it = seeds.begin(), end = seeds.end();
      it != end; ++it)
  {
    const double radius = double(it->second + 1)* max_v;
    CGAL::Random_points_on_sphere_3<Bare_point> points_on_sphere_3(radius);
    typename Mesh_domain::Construct_intersection construct_intersection =
      domain.construct_intersection_object();

    std::vector<Vector_3> directions;
    if(it->second < 2) {
      // shoot in six directions
      directions.push_back(Vector_3(-radius, 0, 0));
      directions.push_back(Vector_3(+radius, 0, 0));
      directions.push_back(Vector_3(0, -radius, 0));
      directions.push_back(Vector_3(0, +radius, 0));
      directions.push_back(Vector_3(0, 0, -radius));
      directions.push_back(Vector_3(0, 0, +radius));
    } else {
      for(int i = 0; i < 20; ++i)
      {
        // shoot 20 random directions
        directions.push_back(*points_on_sphere_3++ - CGAL::ORIGIN);
      }
    }

    BOOST_FOREACH(const Vector_3& v, directions)
    {
      const Bare_point test = it->first + v;
      const typename Mesh_domain::Intersection intersect =
        construct_intersection(Segment_3(it->first, test));
      if (CGAL::cpp11::get<2>(intersect) != 0)
      {
        Weighted_point pi = p2wp(CGAL::cpp11::get<0>(intersect));

        // This would cause trouble to optimizers
        // check pi will not be hidden
        typename Tr::Locate_type lt;
        Cell_handle c;
        int li, lj;
        Cell_handle pi_cell = tr.locate(pi, lt, li, lj);
        if(lt != Tr::OUTSIDE_AFFINE_HULL) {
          switch (tr.dimension())
          { //skip dimension 0
          case 1:
            if (tr.side_of_power_segment(pi_cell, pi, true) != CGAL::ON_BOUNDED_SIDE)
              continue;
            break;
          case 2:
            if (tr.side_of_power_circle(pi_cell, 3, pi, true) != CGAL::ON_BOUNDED_SIDE)
              continue;
            break;
          case 3:
            if (tr.side_of_power_sphere(pi_cell, pi, true) != CGAL::ON_BOUNDED_SIDE)
              continue;
          }
        }

        //check pi is not inside a protecting ball
        std::vector<Vertex_handle> conflict_vertices;
        if (tr.dimension() == 3)
        {
          tr.vertices_on_conflict_zone_boundary(pi, pi_cell
            , std::back_inserter(conflict_vertices));
        }
        else
        {
          for (typename Tr::Finite_vertices_iterator vit = tr.finite_vertices_begin();
               vit != tr.finite_vertices_end(); ++vit)
          {
            if (vit->point().weight() > 0.)
              conflict_vertices.push_back(vit);
          }
        }
        bool pi_inside_protecting_sphere = false;
        BOOST_FOREACH(Vertex_handle cv, conflict_vertices)
        {
          if (cv->point().weight() == 0.)
            continue;
          if (CGAL::compare_squared_distance(pi.point(), wp2p(cv->point()), cv->point().weight())
              != CGAL::LARGER)
          {
            pi_inside_protecting_sphere = true;
            break;
          }
        }
        if (pi_inside_protecting_sphere)
          continue;
        const typename Mesh_domain::Index index = CGAL::cpp11::get<1>(intersect);

        Vertex_handle v = tr.insert(pi);

        // `v` could be null if `pi` is hidden by other vertices of `tr`.
        CGAL_assertion(v != Vertex_handle());

        c3t3.set_dimension(v, 2); // by construction, points are on surface
        c3t3.set_index(v, index);
      }
      // else
      // {
      //   std::cerr <<
      //     boost::format("Error. Segment (%1%, %2%) does not intersect the surface!\n")
      //     % it->first % test;
      // }
    }
  }
  std::cout << "  " << tr.number_of_vertices() << " initial points." << std::endl;
  if ( c3t3.triangulation().dimension() != 3 )
  {
    std::cout << "  not enough points: triangulation.dimension() == "
              << c3t3.triangulation().dimension() << std::endl;
    CGAL::internal::Mesh_3::init_c3t3(c3t3, domain, criteria, 20);
    std::cout << "  -> " << tr.number_of_vertices() << " initial points." << std::endl;
  }
}

#endif // CGAL_MESH_3_INITIALIZE_TRIANGULATION_FROM_LABELED_IMAGE_H